PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16904_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 201aa    MW: 22068.3 Da    PI: 6.7831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16904_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18249455
                                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                         +GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAaka+++a+  + g
  cra_locus_16904_iso_1_len_826_ver_3  2 RGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAAKAYDEAAILMSG 49
                                         8*****9.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003671.1E-9112IPR001471AP2/ERF domain
PROSITE profilePS5103221.259157IPR001471AP2/ERF domain
SMARTSM003803.3E-36263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31257IPR001471AP2/ERF domain
CDDcd000185.29E-32258No hitNo description
SuperFamilySSF541711.7E-19259IPR016177DNA-binding domain
PfamPF008472.4E-11247IPR001471AP2/ERF domain
PRINTSPR003671.1E-92339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XRGVRQRHWG SWVSEIRHPL LKRRVWLGTF ETAEEAAKAY DEAAILMSGR NAKTNFPIEM  60
NNDNNASTSS ISSSSSSSGP SLSAVLGAKL RKCCKSPSPS LTCLRLDTEN SHIGVWQKRA  120
GPRSDSNWVM TVDLGKKKDD DLEQGSSTTT TSFNQTSQQP PATTTAAVEI TSEGTTSSVE  180
KTMDEEERIA LQMIEELLNR N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17261767ATERF1
3gcc_A6e-17261767ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870387.12e-88PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI332e-78WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLS8CLD51e-86S8CLD5_9LAMI; Uncharacterized protein
STRINGGLYMA08G22590.13e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476